Not unless you post screenies of it.
Mods are pointless and rather impossible for tq to check for.They would have to scan a 1gig + install every time it's run and then compare it vs default values AND update that every patch... it's simply not feasible.
Last I checked they check the file info on conquer.exe and MIGHT scan for running processes but anything past that and their 'protection' would literally be considered a virus by almost any definition you can think of.
Hell... if they even report the running processes they could get in trouble which is why iirc it's sort of a trigger to send a botcheck packet so the actual data doesn't leave your computer but rather just says "hey, something is running that shouldn't be". Or at least that's how I seem to remember it.